Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs67399634 | chr14:23229636 | C/T | 1.98E-9 | 487 | 15.3 | 16.85 | 19.02 | KM Plot |
| THCA | rs67410356 | chr16:20780262 | C/T | 4.8E-5 | 490 | 16.37 | 14.67 | 17.47 | KM Plot |
| THCA | rs67411475 | chr7:75886706 | G/A | 0.000101 | 475 | 16.3 | 16.33 | 11.3 | KM Plot |
| THCA | rs6742278 | chr2:226999 | C/T | 7.28E-12 | 490 | 20.63 | 15.3 | 15.9 | KM Plot |
| THCA | rs67428664 | chr16:20779962 | A/T | 4.8E-5 | 490 | 16.37 | 14.67 | 17.47 | KM Plot |
| THCA | rs6747253 | chr2:201748415 | A/G | 4.29E-5 | 490 | 4.33 | 15.68 | 16.23 | KM Plot |
| THCA | rs67481869 | chr21:37456290 | C/T | 0.000122 | 477 | 16.63 | 14.33 | 9.73 | KM Plot |
| THCA | rs6754610 | chr2:128448901 | C/T | 0.000256 | 490 | 15.5 | 16.85 | 16.25 | KM Plot |
| THCA | rs6754680 | chr2:29171964 | A/G | 0.00011 | 490 | 14.3 | 15.22 | 16.07 | KM Plot |
| THCA | rs6755468 | chr2:55240026 | A/C | 0.000157 | 483 | 12.5 | 16.22 | 17.72 | KM Plot |
| THCA | rs67555927 | chr5:96345386 | TTGC/TTGCTGCTGCTGC | 5.54E-10 | 483 | 15.7 | 16.73 | 20.6 | KM Plot |
| THCA | rs67573009 | chr16:20755662 | A/G | 3.38E-5 | 490 | 16.38 | 14.47 | 17.65 | KM Plot |
| THCA | rs67573770 | chr15:65713121 | C/G | 0.00025 | 466 | 15.27 | 15.9 | 17.48 | KM Plot |
| THCA | rs67602946 | chr6:153285102 | C/CA | 0 | 488 | 15.17 | 18.32 | 6.92 | KM Plot |
| THCA | rs6760429 | chr2:55228499 | C/T | 0.000187 | 482 | 13.23 | 15.63 | 17.88 | KM Plot |